Timeline


and

05/16/2012: Today

15:25 Ticket #1118 (Diagnose Why UHC ETL Takes a Very Long Time) created by ngraham
As per the Marion ETL (#1090), we're seeing that UHC takes a very long …
14:10 Changeset [1247:4da6d7b0b96b] by Nathan Graham <ngraham@…>
performance_1069- Added script timing to improve readability of logs. - Added GFR test as …
12:13 Changeset [1246:5445d90abde9] by Nathan Graham <ngraham@…>
performance_1069Added 15 randomly selected queries from users that took >10min (#1069) - …
09:35 HeronPerformance edited by dconnolly
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09:33 HeronPerformance edited by dconnolly
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05/15/2012: Yesterday

15:58 Changeset [1245:709a19f938ff] by Nathan Graham <ngraham@…>
performance_1069- Re-order tests to put slower ones last (#1069 and #1090)
15:16 Changeset [1244:6909a8cb8879] by Nathan Graham <ngraham@…>
heron-marion- #1069: Used bitmap indexes as per suggestion from Peter Beninato …
13:49 Changeset [1243:83e193697254] by Mani Nair mnair@…
heron-marionCorrected null start_date field on uhc_observation_fact_proc view:

05/14/2012:

17:00 Changeset [1242:3a10767aa588] by Nathan Graham <ngraham@…>
default- Updated doc test for the "noDelete" option - pass sys.argv to _usage to …
15:43 Changeset [1241:67cc3a5b2e79] by Nathan Graham <ngraham@…>
default- Added command-line option to avoid deleting files (good for testing)
13:03 HERONTrainingMaterials/FrontiersDataAccess created by tmcmahon
12:58 Changeset [1240:c8ac8bd98e39] by Dan Connolly <dconnolly@…>
default- reduce logging to WARN; output list of files archived (#855) - fixed …
12:35 Changeset [1239:46d76bd943f8] by Dan Connolly <dconnolly@…>
defaultdefault to printing help (#855)
12:31 Changeset [1238:4b6ea91e5c45] by Dan Connolly <dconnolly@…>
defaultrefactor jboss_log_archive to reduce authority needed by sections of code …
11:16 Changeset [1237:b010df97d986] by Dan Connolly <dconnolly@…>
defaultmake jboss_log_archive usage separately doctest-able (#855)
11:15 Changeset [1236:bfe8c562abb7] by Dan Connolly <dconnolly@…>
defaultunix newlines (#855)
10:57 Changeset [1235:a60b8a83c1b1] by Dan Connolly <dconnolly@…>
defaultpep8 whitespace fixes to jboss_log_archive (#855)

05/11/2012:

17:50 Changeset [1234:f34b392d6747] by Nathan Graham <ngraham@…>
defaultAdded script for pulling jboss logs for archiving. - Copies remote log …
17:06 Changeset [1232:fac4222bc7c6] by Dan Connolly <dconnolly@…>
heron-marionuse '@' rather than (possibly null) com.AUTHRZING_PROV_ID (#1061, #1090) …
16:21 Ticket #1108 (IE navigation spacing issue) closed by tmcmahon
fixed: Victory!  edited ie css for theme.
12:59 Changeset [1233:5a6810e4ca75] by Nathan Graham <ngraham@…>
default- Default heron-test to include idx information. - Reference ClarityB as …

05/10/2012:

17:28 Changeset in raven-j [597:8ae6ffa20453] by Dan Connolly <dconnolly@…>
audit_600performance of queries in the last week, with pop-up details
17:16 Ticket #1052 (individual medication terms show up as folders rather than leaves) closed by ngraham
invalid: Hmm...actually, it appears to be the modifiers. If I disable the …
16:36 Ticket #1076 (Appropriate Test for Frontiers Consents) closed by ngraham
fixed: The failure only affects the test environment as we have > 1000 in the …
16:35 Changeset [1231:6c39566689cb] by Nathan Graham <ngraham@…>
defaultModify Frontiers test to be a function of patients in IDX (#1076).
16:33 Changeset in raven-j [596:ebee8b7d17f7] by Dan Connolly <dconnolly@…>
audit_600performance of each query more or less working
12:53 Changeset in raven-j [595:d5a82ba395f8] by Dan Connolly <dconnolly@…>
audit_600d3/tipsy line chart works - consolidate reports under resports/ …
11:41 Changeset in raven-j [594:765b31601665] by Dan Connolly <dconnolly@…>
audit_600return performance_data as JSON

05/09/2012:

18:05 Changeset in raven-j [592:c8ecd94df7c0] by Dan Connolly <dconnolly@…>
audit_600performance report showing machine load (oops: middle tier load not so …
17:55 Changeset in raven-j [591:35846d16589c] by Dan Connolly <dconnolly@…>
audit_600moving av/ from htdocs-raven/ to templates/
17:54 Changeset in raven-j [590:4db8d4f47020] by Dan Connolly <dconnolly@…>
audit_600renaming htdocs to templates in development.ini too
15:34 Ticket #1072 (Readmission days feature from UHC doesn't work) closed by mnair
fixed
15:26 Ticket #1109 (patient set query for burn dx and any FLO #s takes over 170 CPU minutes) created by dconnolly
The query started 2012-05-09 12:19:02 and it's still running. It's …
15:23 Changeset [1230:871ebfaca1ec] by Dan Connolly <dconnolly@…>
performance_1069query for burn dx and FLO takes over 170 CPU minutes
15:10 Ticket #1108 (IE navigation spacing issue) created by tmcmahon
While training Judy today, I came across an IE spacing issue. Need to fix …
14:37 Ticket #998 (content management system for Frontiers Research (CTSA) web site) closed by tmcmahon
fixed: Trained with Judy this morning. Drupal meets workflow and usability …
14:01 Changeset [1229:6bfed28e0f30] by Dan Connolly <dconnolly@…>
heron-marionStart branch for heron-marion-update ETL (#1090)
11:55 Ticket #1056 (Cannot search for a few UHC complications) closed by mnair
fixed: Found the issue in concept_load script and fixed it.
11:53 Changeset [1228:050273d59171] by Mani Nair mnair@…
defaultComplications Concept's fix
11:43 Changeset [1227:4e102872598c] by Nathan Graham <ngraham@…>
performance_1069Added various queries from customers for timing purposes. - Updated …
11:39 Changeset [1226:6fe541fbdf1e] by Mani Nair mnair@…
defaultMinor corrections
11:38 Changeset [1225:78f619fd59fa] by Mani Nair mnair@…
defaultMinor corrections
10:41 Ticket #1044 (Support UHC ICD9 Diagnosis and Procedures) closed by mnair
fixed: Added logic to extract icd9s and encounter mapping
10:39 Changeset [1224:3c430fe043ef] by Mani Nair mnair@…
defaultMerge with Dan's work on disp facts
09:54 Changeset in i2b2-webclient [55:bfdbc4d9a981] by Nathan Graham <ngraham@…>
defaulti2b2_loader.js was incorrectly merged: Uncomment ONT,CRC,WORK cells …
09:43 Changeset [1223:6559c7893863] by Mani Nair mnair@…
defaultAdded ICD9 diagnosis and encounter mapping logic corrections
09:43 Changeset [1222:4357ecb329a7] by Mani Nair mnair@…
defaultAdded ICD9 diagnosis and encounter mapping logic
09:32 Changeset in i2b2-webclient [54:b92b898e89f6] by Nathan Graham <ngraham@…>
defaultMerge with partners 1.603 release

05/08/2012:

16:06 Changeset [1221:b7d34ce6c590] by Dan Connolly <dconnolly@…>
defaultrelax join constraints in kuh_med_disp_facts (#1061) - left join units …
16:05 Changeset [1220:580880e45dd7] by Dan Connolly <dconnolly@…>
defaultlog name of script in check_etl (#1061)
15:01 Ticket #1104 (automated test for cancer survival plug-in web UI) created by dconnolly
for milestone:heron-marion-update, we plan to upgrade to i2b2 1.603 …
14:38 Changeset [1219:ebd6c92d6047] by Dan Connolly <dconnolly@…>
performance_1069automated test for exlusion handling (#1075) - saved_query() runs …
12:24 HeronAdminDev edited by dconnolly
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12:21 Changeset in raven-j [589:d90009d464ad] by Dan Connolly <dconnolly@…>
audit_600minimally integrate heron_wsgi web layer into heron-admin devdoc
12:09 Changeset in raven-j [588:22ba30808e7c] by Dan Connolly <dconnolly@…>
audit_600organize admin_lib module docs to tell a coherent story - wordsmith …
10:01 Changeset in raven-j [587:97e8efe46fdf] by Dan Connolly <dconnolly@…>
audit_600Re-tell heron_policy doctest story, analagous to training materials and …
09:20 HeronAdminDev edited by dconnolly
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09:18 HeronAdminDev edited by dconnolly
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09:06 Changeset in raven-j [586:6ed96ead2c18] by Dan Connolly <dconnolly@…>
audit_600elaborate admin_lib package notions, esp. AuthorityInjection
08:46 Changeset in raven-j [585:bbefe41c0fed] by Dan Connolly <dconnolly@…>
audit_600cite AuthorityInjection
08:45 Changeset in raven-j [584:c70b5dac34c2] by Dan Connolly <dconnolly@…>
audit_600use req.idvault_entry rather than login_caps[0] to clarify
08:35 Changeset in raven-j [583:e7c3a0643463] by Dan Connolly <dconnolly@…>
audit_600demand-load native ldap implementation to facilitate pure-python testing …

05/07/2012:

17:44 Changeset in raven-j [582:3ed9db700109] by Dan Connolly <dconnolly@…>
audit_600ignore sphinx/_build
17:43 Changeset in raven-j [581:2dbf938de055] by Dan Connolly <dconnolly@…>
audit_600medcenter unit tests run without lxml; devdoc coherent
17:42 Changeset [1218:f7d55af2a657] by Nathan Graham <ngraham@…>
defaultMerge with Clarity2010.
17:41 Changeset in raven-j [580:a1152b360761] by Dan Connolly <dconnolly@…>
audit_600style fixes in sealing.py
17:30 Ticket #1103 (brand redcap.kumc.edu homepage) created by rwaitman
Just thinking we may want to mention Frontiers more on that page to …
17:08 Changeset [1217:f48597e2d3c7] by Nathan Graham <ngraham@…>
performance_1069- Remove explain plan from query prep. - Pull in the query description …
16:42 Changeset [1216:09ffceb0b58c] by Nathan Graham <ngraham@…>
performance_1069Added missing description for test.
16:07 Changeset [1215:1caf23f844d1] by Nathan Graham <ngraham@…>
performance_1069- Default the test description if not provided. - Run test initialization …
14:57 Changeset [1214:d3586fce3357] by Nathan Graham <ngraham@…>
Clarity2010Back out change to use ICD9 from clarity_edg (rev e83224d4554f) as per …
14:17 DevTools edited by dconnolly
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13:58 Changeset in raven-j [579:834e8d8fc93c] by Dan Connolly <dconnolly@…>
audit_600add LDAP api for CSV mock directory data
13:33 Changeset [1213:c3301ee9130d] by Nathan Graham <ngraham@…>
performance_1069Parse options for timing tests: file, directory, list file, description, …
13:32 Changeset in raven-j [578:36d2113fe39a] by Dan Connolly <dconnolly@…>
audit_600include training data in mock directory
13:26 Changeset in raven-j [577:21a51ee92f32] by Dan Connolly <dconnolly@…>
audit_600mock_directory.py can read CSV from pkg_resources
13:25 Changeset in raven-j [576:317ea15eeaf6] by Dan Connolly <dconnolly@…>
audit_600mockDirectory.csv converted from .html
13:16 Changeset in raven-j [575:cdf2ff3b96db] by Dan Connolly <dconnolly@…>
audit_600to avoid lxml installation woes: conversion from hcard to CSV
12:03 Changeset in raven-j [574:b4b1378b9f22] by Dan Connolly <dconnolly@…>
audit_600enable sphinx.ext.todo for documenting todos
11:53 Changeset in raven-j [573:7434d8a1e48a] by Dan Connolly <dconnolly@…>
audit_600starting API doc: sphinx-apidoc --full -o devdoc heron_wsgi
10:49 Changeset [1212:2815cb95712d] by Nathan Graham <ngraham@…>
performance_1069test query: Amputation of lower limb.
10:47 Changeset [1211:5cc5a9043f6a] by Nathan Graham <ngraham@…>
performance_1069Backed out changeset: b67fd779fdf5 due to accidental ini file check-in.
10:41 Changeset [1210:b67fd779fdf5] by Nathan Graham <ngraham@…>
performance_1069test query: Amputaton of lower limb
10:25 Ticket #1101 (Missing patient numbers marital status concepts) created by tmcmahon
In the demographics area, the marital status folder displays fact# and …

05/06/2012:

01:36 Changeset in raven-j [572:9159b208f310] by Dan Connolly <dconnolly@…>
audit_600ignore more eclipse stuff etc.
01:13 Changeset in raven-j [571:30fdd8a51d65] by Dan Connolly <dconnolly@…>
audit_600do not version control eclipse settings

05/05/2012:

18:35 HeronAdminDev edited by dconnolly
(diff)
18:03 Changeset in raven-j [570:c640b3f3e75b] by Dan Connolly <dconnolly@…>
audit_600get rid of obsolete Java code and apache config
15:31 WritingQualityCode edited by dconnolly
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11:23 WritingQualityCode edited by dconnolly
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11:22 WritingQualityCode edited by dconnolly
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11:20 WritingQualityCode edited by dconnolly
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11:20 RavenPortalDevelopment edited by dconnolly
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11:18 HeronAdminDev edited by dconnolly
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11:13 WikiStart edited by dconnolly
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11:11 DevTools edited by dconnolly
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11:03 WritingQualityCode edited by dconnolly
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11:03 PythonVirtualEnvironment edited by dconnolly
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10:49 PythonOnWindows edited by dconnolly
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10:47 WritingQualityCode edited by dconnolly
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10:35 PythonVirtualEnvironment edited by dconnolly
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10:25 WritingQualityCode created by dconnolly
10:25 PythonOnWindows edited by dconnolly
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10:19 PythonOnWindows edited by dconnolly
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09:59 DevTools edited by dconnolly
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09:28 AuthorityInjection edited by dconnolly
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09:28 AuthorityInjection edited by dconnolly
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09:27 AuthorityInjection edited by dconnolly
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08:37 TEAL edited by dconnolly
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01:31 AuthorityInjection created by dconnolly
01:30 RavenPortalDevelopment edited by dconnolly
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00:06 DevTools edited by dconnolly
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05/04/2012:

23:57 ApacheTroubleShooting edited by dconnolly
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23:55 DevTools edited by dconnolly
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23:39 DevTools edited by dconnolly
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23:04 DevTools edited by dconnolly
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22:59 JavaDevTools edited by dconnolly
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22:58 DevTools edited by dconnolly
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22:57 JavaScriptTips edited by dconnolly
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22:55 JavaScriptTips edited by dconnolly
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22:55 JavaScriptTips edited by dconnolly
move D3 note here (diff)
22:28 JavaDevTools edited by dconnolly
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22:26 JavaDevTools edited by dconnolly
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22:23 JavaDevTools edited by dconnolly
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22:22 JavaDevTools edited by dconnolly
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22:00 Ticket #252 (deploying updates to the i2b2 web client UI is ugly) reopened by dconnolly
This bit us again recently (see #1071, #1096).
21:38 JavaDevTools edited by dconnolly
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21:34 DevTools edited by dconnolly
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21:33 DevTools edited by dconnolly
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20:47 Using I2B2 edited by dconnolly
update "Starting ..." section w.r.t. #134, #394; cleanup other stuff (diff)
20:35 Using I2B2 edited by dconnolly
moving component diagram from RavenPortalDevelopment; noting R work (diff)
20:33 Blog: HERON Bow Creek Release brings Cancer Survival Analysis, R integration edited by dconnolly
20:25 RavenPortalDevelopment edited by dconnolly
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18:15 HeronAdminDev edited by dconnolly
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18:13 Changeset in raven-j [569:4f7a428354f2] by Dan Connolly <dconnolly@…>
audit_600skeleton config file
18:08 HeronAdminDev created by dconnolly
17:49 RavenPortalDevelopment edited by dconnolly
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17:25 Changeset in raven-j [568:2fdb3f203842] by Dan Connolly <dconnolly@…>
defaultMerge with re-worked audit_600 history (#600)
17:24 Changeset in raven-j [567:9a590877cebf] by Dan Connolly <dconnolly@…>
defaultundo left-overs after cleaning up history from code review (#600)
17:05 Changeset in raven-j [566:13f12c1f70d0] by Dan Connolly <dconnolly@…>
audit_600add KUMC style to usage report (#600) - KUMC style replaces signature, …
17:03 Changeset in raven-j [565:891d1a282b0f] by Dan Connolly <dconnolly@…>
audit_600Query volume report by users is functional (#600) - SQL query borrowed …
16:55 Changeset in raven-j [564:e1099244bc30] by Dan Connolly <dconnolly@…>
audit_600add simple db query to report1, using sqlalchemy and injector (#600)
16:51 Changeset in raven-j [563:f209f524a02a] by Dan Connolly <dconnolly@…>
audit_600add trivial report using pyramid routing and genshi templating (#600)
16:39 Changeset in raven-j [562:66e775af5270] by Dan Connolly <dconnolly@…>
audit_600move htdocs-heron/ to the more traditional templates/
15:22 Changeset in raven-j [560:55e20645dd31] by Dan Connolly <dconnolly@…>
defaultadd KUMC style to usage report (#600)
15:18 Changeset in raven-j [559:4946231122db] by Dan Connolly <dconnolly@…>
defaultQuery volume report by users is functional (#600) - a bit more devdoc: …
15:06 Changeset in raven-j [558:48d627b4cd8d] by Dan Connolly <dconnolly@…>
defaultscribbly notes on how to run/develop heron-admin, with failure modes …
15:05 Changeset in raven-j [557:abd0a5b9855e] by Dan Connolly <dconnolly@…>
defaultadd report page with a simple DB query (#600)
14:42 Changeset in raven-j [556:4d1bba98794f] by Dan Connolly <dconnolly@…>
defaultadd trivial report page (#600) - move htdocs-heron to the more …
13:18 Changeset in raven-j [561:3a53f1c970ee] by Dan Connolly <dconnolly@…>
audit_600take eclipse .project config out of version control
13:18 Changeset in raven-j [555:297e6110c177] by Dan Connolly <dconnolly@…>
defaulttake eclipse .project config out of version control
08:50 HeronPerformance edited by dconnolly
note "Supercharging i2b2" (diff)
08:49 Blog: Want to swim in Big Data? We are seeking summer interns created by rwaitman
08:36 HeronPerformance edited by dconnolly
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08:34 HeronPerformance edited by dconnolly
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08:33 HeronPerformance edited by dconnolly
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08:23 Changeset [1209:dab3ef3769c7] by Nathan Graham <ngraham@…>
performance_1069Remove timing_queries.sql - we now have the extracts created by …

05/03/2012:

18:46 Changeset [1208:4c9752bddc17] by Nathan Graham <ngraham@…>
performance_1069test queries: - (Declined Ethnicity OR Latino) AND NAACCR AND NOT(Deceased …
17:52 Changeset [1207:5fceb54da7cc] by Nathan Graham <ngraham@…>
performance_1069Explain plan for single statements: Backup before refactoring for …
17:16 Ticket #1097 (Tumor registry metadata lacks leaf concepts) closed by dconnolly
fixed: Fixed in [39a466cd4849]. I also did an in-place update of production …
16:55 Changeset [1206:39a466cd4849] by Dan Connolly <dconnolly@…>
defaultOops: paths like like '\i2b2\naaccr i2b2\naaccr\%' (#1097, #804) resulted …
15:46 Ticket #1097 (Tumor registry metadata lacks leaf concepts) created by dconnolly
e.g. the default R plug-in outcome, Death (Tumor Registry: NAACCR 1760) is …
15:27 Ticket #1096 (R plug-in failed with error dialog due to lack of write permission, X ...) created by rwaitman
The response to the "Run Kaplan Meier Analysis" button was an error dialog …
14:12 Changeset [1205:0b18f435ccfe] by Nathan Graham <ngraham@…>
performance_1069Move timing query execution out of heron_load and in to its own file …
12:02 Changeset [1204:cf5b226434d3] by Nathan Graham <ngraham@…>
performance_1069Use isoformat() datetime function - same result but works on Windows too.
11:50 Changeset [1203:9fecf1a14b36] by Nathan Graham <ngraham@…>
performance_1069test query: Diagnosis of diabetes AND Race=White AND (Gender Male OR …
11:19 Changeset [1202:2eaf6520e30e] by Dan Connolly <dconnolly@…>
performance_1069document query description arg (#1069)
11:18 Changeset [1201:c81de11c2f35] by Dan Connolly <dconnolly@…>
performance_1069capture query description while we're at it (#1069)
11:18 Changeset [1200:e8b566b5e72b] by Dan Connolly <dconnolly@…>
performance_1069add .description property to LoggedCursor?
11:15 Changeset [1199:5df6482f3be9] by Dan Connolly <dconnolly@…>
performance_1069test query: 3-way AND starting with frontiers flag
11:13 Changeset [1198:26afb7c01155] by Dan Connolly <dconnolly@…>
performance_1069capture_query.py captures SQL, XML, etc. of queries from QT_QUERY_MASTER …
08:42 TEAL edited by dconnolly
responding to a request for a diagram for HCM connections (diff)

05/02/2012:

16:49 Changeset [1197:9bdfa5978c58] by Mani Nair mnair@…
defaultAdded ICD9 diagnosis and encounter mapping logic
16:49 Changeset [1196:c8d46cfde920] by Mani Nair mnair@…
defaultAdded ICD9 diagnosis and encounter mapping logic
12:39 RussEpicScratchpadOct192010.sql attached to HospitalEpicSource by rwaitman
further exploratory work
11:43 Ticket #1060 (Create similar look for Frontiers surveys) closed by tmcmahon
fixed: I could not change the color of the REDCap survey but could include an …
11:25 HERONDataRequestOversightCommitteeMay22012MeetingNotes.docx attached to DROCMeetingMinutes by tmcmahon
May 2012 Meeting Notes

05/01/2012:

17:43 Changeset [1195:113ce8f85824] by Nathan Graham <ngraham@…>
performance_1069Oops. Forgot to fill in the query name when inserting the test results.
17:12 Ticket #1079 (version control for frontiersresearch.org drupal config) closed by dconnolly
fixed: As discussed today, workflow is for managing/staging content; we still …
16:50 Ticket #858 (why does the i2b2 1.6 index design with INSTANCE_NUM cause horrible HERON ...) closed by dconnolly
duplicate: See #1069 for follow-up.
16:18 HeronLoad edited by dconnolly
update split between ETL and validation tasks (diff)
13:11 Ticket #1075 (Seach with exclude handled incorrectly in i2b2 1.6.02) closed by ngraham
fixed: I had searched for this issue on the i2b2 Jira but didn't find it. …
13:06 Ticket #1087 (Upgrade to i2b2 v1.6.03) created by ngraham
Our users are running in to a known issue with i2b2 and exclusions (please …
11:46 Changeset [1194:511595015f05] by Nathan Graham <ngraham@…>
performance_1069Integrate timing tests into paver. - Use beginning and end tags around …
08:36 Ticket #205 (KUMC Enrollment Activity Report) closed by badagarla
fixed

04/30/2012:

16:36 KCCC_PioneersWorkflowApril262012.JPG attached to DROCMeetingMinutes by tmcmahon
May 2012: KCCC Workflow
16:36 HERON_ApriltoOctober2012Roadmapv2postDROC.jpg attached to DROCMeetingMinutes by tmcmahon
May 2012: Roadmap to discuss
16:35 HERONDataRequestOversightCommitteeAgendaMay22012.docx attached to DROCMeetingMinutes by tmcmahon
May 2012 Meeting Agenda
16:28 Changeset [1193:eedcba2af322] by Nathan Graham <ngraham@…>
performance_1069First-pass at some automated timing tests to support i2b2 slowdown (#1069) …

04/27/2012:

14:41 HERONDataRequestOversightCommitteeMeetingNotesApril42012.docx attached to DROCMeetingMinutes by tmcmahon
April 2012 Meeting Notes

04/26/2012:

10:22 Ticket #1079 (version control for frontiersresearch.org drupal config) created by dconnolly
Drupal provides version control for web site content using its database, …
10:08 Changeset [1192:e83224d4554f] by Nathan Graham <ngraham@…>
Clarity2010- We don't need to link to clarity.ip_data_store for the ept_csn - use …
08:55 Ticket #1078 (validate and release HERON marion build) created by dconnolly
As per HeronLoad, much like #1008 and #906. Data from April. As noted …

04/25/2012:

17:10 Changeset [1191:cccafae44990] by Nathan Graham <ngraham@…>
Clarity2010pat_enc_dx.icd9_code is deprecated - link to clarity_edg.current_icd9_list …
14:44 Ticket #1076 (Appropriate Test for Frontiers Consents) created by ngraham
In source:heron_load/idx_i2b2_transform.sql there is the following test: …
14:31 TEAL edited by dconnolly
(diff)
14:07 Ticket #1047 (develop test data for IDX) closed by achoudhary
fixed: done
14:05 Ticket #1075 (Seach with exclude handled incorrectly in i2b2 1.6.02) created by tmcmahon
This may not be limited to the exclude functionality. Not sure what is …
13:47 TEAL edited by dconnolly
capturing ETL options that I sketched with Russ (diff)
08:46 Ticket #1074 (Prepare Informatics EAB report) created by rwaitman
reference last year's EAB.  Follow the same format:  CRIS/Velos, - …

04/24/2012:

16:14 Changeset [1190:ba01696b952d] by Nathan Graham <ngraham@…>
Clarity2010Flowsheet changes for Clarity 2010 - ip_data_store.ept_csn is deprecated - …
10:14 Ticket #1073 (Add IP_MAR View to our list of exported tables / views) created by ngraham
For medication administration information, we need to have access to the …

04/23/2012:

17:47 Ticket #1071 (HERON Plugins Missing due to incomplete i2b2 webclient deployment) closed by ngraham
fixed: From the diff between dev/prod, I saw that the Kaplan Meier plugin was …
16:50 Ticket #1072 (Readmission days feature from UHC doesn't work) created by rwaitman
I can see the data is in the database: concept_cd = UHC|READMISSION and …
16:21 Ticket #1071 (HERON Plugins Missing due to incomplete i2b2 webclient deployment) created by ngraham
Russ brought it to my attention that the plugins are no-longer viewable in …
15:05 Blog: HERON: Big Hill release adds home medications, other medication orders, and expands UHC data edited by rwaitman
13:14 Ticket #481 (instruct Frontiers, HERON, REDCap users to cite HICTR/CTSA grant, i2b2, ...) closed by tmcmahon
fixed: Citation information added to frontiers site. …

04/21/2012:

13:06 PioneerFriends edited by dconnolly
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13:05 PioneerFriends edited by dconnolly
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04/20/2012:

09:36 DevTools edited by dconnolly
(diff)
09:36 DevTools edited by dconnolly
(diff)
09:33 DevTools edited by dconnolly
refactoring coding chunks notes between DevTools and FreeNode (diff)
09:29 FreeNode edited by dconnolly
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09:24 FreeNode edited by dconnolly
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09:22 DevTools edited by dconnolly
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09:19 DevTools edited by dconnolly
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04/19/2012:

17:16 Blog: HERON: Big Hill release adds home medications, other medication orders, and expands UHC data edited by rwaitman
17:15 Ticket #228 (web based "is it done yet?" interface for monitoring HERON ETL, de-id ...) reopened by dconnolly
Nathan and I chatted a little about an "is it done yet?" web page for …
16:42 Changeset in i2b2-webclient [52:257579b87a7d] by Nathan Graham <ngraham@…>
defaultEnable modifiers by default (#777, #1004).
16:36 Milestone heron-bighill-update completed
Top goals from HeronProjectTimeline#March2012Planning: * deal with 2009 …
16:36 Ticket #1008 (validate and release HERON bighill build) closed by ngraham
fixed: Thanks for everyone's help! It's up! Great work!
16:15 Blog: HERON: Big Hill release adds home medications, other medication orders, and expands UHC data edited by dconnolly
15:18 Ticket #134 (jboss start/stop/status administrative interface) closed by ngraham
fixed: The /etc/init.d/jboss script works to: * auto-start jboss on boot-up * …
13:33 Ticket #1038 (New medication modifiers: Prod install/testing) closed by ngraham
fixed
13:09 Ticket #1061 (Why does Med Dispense ETL output only cover 71% of the input patients?) created by ngraham
In #1038, we discovered that the check for dispensed meds is only matching …
11:42 PioneerFriends edited by rwaitman
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11:41 PioneerFriends edited by rwaitman
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11:41 PioneerFriends edited by rwaitman
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11:40 PioneerFriends edited by rwaitman
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11:40 PioneerFriends edited by rwaitman
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11:40 PioneerFriends edited by rwaitman
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11:38 PioneerFriends edited by rwaitman
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11:38 PioneerFriends edited by rwaitman
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11:36 FrontiersPioneersUseCase.JPG attached to PioneerFriends by rwaitman
Frontiers Pioneers Use Case April 19, 2012
11:30 PioneerFriends edited by tmcmahon
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11:28 Changeset [1189:8178d0aa4159] by Nathan Graham <ngraham@…>
defaultFixed error with ethnicity folder being a leaf (see #1008)
11:20 frontiers-planning-20120419.JPG attached to PioneerFriends by tmcmahon
Brainstorm from 2012-04-19 Meeting
11:11 Ticket #1060 (Create similar look for Frontiers surveys) created by tmcmahon
Include Frontiers image and color in REDCap surveys linked from Frontier's …
09:33 Changeset [1188:43e111b132ae] by Nathan Graham <ngraham@…>
default- Fixed reference to tree_cd (should be blueheronmetadata.tree_cd).
09:31 PioneerFriends edited by dconnolly
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08:04 Changeset [1187:d59baffcc2e5] by Nathan Graham <ngraham@…>
defaultAdd exception in facts concepts test for UHC and meds for now (#1008, …
07:59 Ticket #1057 (Diagnose why not all medication facts use known concepts) created by ngraham
We found the following while building concepts statistics for the bighill …
07:57 Ticket #1056 (Cannot search for a few UHC complications) created by ngraham
We found the following while building concepts statistics for the bighill …

04/18/2012:

20:30 Changeset in raven-j [593:22135358eef0] by Mike Bostock <mbostock@…>
audit_600A JavaScript? visualization library for HTML and SVG. rev 907c5a50. BSD …
17:55 Ticket #780 (how to ensure age queries work since the i2b2 1.6 upgrade?) closed by dconnolly
fixed: fixed in [980eae622a04]. tested with paver, but not with i2b2. …
17:51 Changeset [1186:980eae622a04] by Dan Connolly <dconnolly@…>
defaultMerge with age_780
17:47 Changeset [1185:7ca11b4de20b] by Dan Connolly <dconnolly@…>
age_780refactor paver tasks for concept loading (#780) - take care to log …
17:46 Changeset [1184:402d1783b8b3] by Dan Connolly <dconnolly@…>
age_780finish up building age concepts from static constants (#780)
17:45 Changeset [1183:cc2c95da2d77] by Dan Connolly <dconnolly@…>
age_780my creds files are case sensitive. sue me. (actually, creds files should …
17:11 Changeset [1182:75527967f657] by Dan Connolly <dconnolly@…>
age_780add the usual "Running: ..." notice for metadata_init.sql (#1045) - …
17:11 Changeset [1181:a44b815e5634] by Dan Connolly <dconnolly@…>
age_780aha... found a portable filename for bsr_dump etc.
17:10 Changeset [1180:7026492577ef] by Dan Connolly <dconnolly@…>
age_780don't rely on epic views in metadata_init (#780, #1045)
16:48 Changeset [1179:77474ea1487b] by Dan Connolly <dconnolly@…>
age_780Merge with default, once more, with feeling
16:44 Changeset [1178:39ebc9c9e236] by Dan Connolly <dconnolly@…>
age_780Merge with heron-bighill to get more heron_init fixes
16:43 HeronPerformance edited by rwaitman
(diff)
16:38 Changeset [1177:5cc9afe8c1d6] by Dan Connolly <dconnolly@…>
age_780Merge with default to get naaccr_init.sql rename fix
15:26 Ticket #799 (review i2b2 upgrade scripts for user history) closed by rwaitman
wontfix
15:24 Ticket #1005 (HERON i2b2 queries that should take under 20 seconds took over 3 minutes) closed by rwaitman
duplicate
14:00 Ticket #1009 (run ETL for HERON bighill build) closed by achoudhary
fixed
12:36 Ticket #1054 (Development of Official Report of Awards Conferred at KUMC) created by mschuette
Item 1. Create report for FY 2011 (including last five years of data) …
10:19 HeronLoad edited by achoudhary
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09:27 PioneerFriends edited by dconnolly
(diff)
09:21 Ticket #1053 (HERON downtime page) created by achoudhary
Create a page that can be enabled during HERON downtime to describe to the …
09:18 PioneerFriends edited by dconnolly
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09:01 Changeset [1176:23e09f031db8] by Nathan Graham <ngraham@…>
default- Only add inpatient/outpatient modifiers if needed field has expected …
08:18 Changeset [1175:b1d0fc5e3e92] by Nathan Graham <ngraham@…>
defaultMerge with heron-bighill - brought in fix for source_master issue.

04/17/2012:

17:32 Ticket #1 (Evaluate ETL tools) closed by dconnolly
wontfix: Russ, Mani, Nathan, Frank and I came to the conclusion that PDI doesn't …
17:27 Changeset [1174:ca78864893cb] by Nathan Graham <ngraham@…>
heron-bighillsource_master is in @DEID, not @KUMC (#1009, #804, #916) - more damage …
17:26 Ticket #1052 (individual medication terms show up as folders rather than leaves) created by dconnolly
When Russ was demo-ing in the group meeting today, I noticed that the …
17:05 Ticket #1045 (Paver Task Failure: heron_init) closed by ngraham
fixed
16:57 Changeset [1173:7920fd9bfaba] by Nathan Graham <ngraham@…>
default- Don't run metadata_init script as blueheronmetadata user (#1045)
13:16 Changeset [1172:f6b12d7c0076] by Nathan Graham <ngraham@…>
defaultMerge with heron-bighill (pulled-in fix from branch)
12:05 Changeset [1171:f1692e937ca6] by Nathan Graham <ngraham@…>
heron-bighill- Use order_med_id to compute the upload chunk "part" to avoid getting …
11:59 Ticket #881 (R Conference Abstract) closed by dconnolly
fixed: see #1049 for follow-up.
09:23 CTSA edited by dconnolly
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09:22 CTSA edited by dconnolly
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09:01 Changeset [1170:8109456ce952] by Dan Connolly <dconnolly@…>
heron-bighillsource_master is in @DEID, not @KUMC (#1009, #804, #916) - more damage …

04/16/2012:

17:08 Ticket #1048 (Medication Hierarchy Normalization) created by ngraham
As per discussion between Russ, Nathan and Dan on 2012.04.10. Goals: * …
16:56 Ticket #1040 (search meds by inpatient/ambulatory) closed by ngraham
fixed
16:42 Changeset [1169:9a4b5043850a] by Nathan Graham <ngraham@…>
default- Added inpatient/outpatient modifiers. - Cleaned up comment regarding …
14:54 Changeset [1168:4a899f408e17] by Nathan Graham <ngraham@…>
defaultAdded zc_ordering_mode (#1040).
13:54 Changeset [1167:3be7f7d42fe5] by Nathan Graham <ngraham@…>
defaultCombine queries for historical/other medication modifiers.
11:32 PythonOnWindows edited by dconnolly
(diff)
11:31 PythonOnWindows edited by dconnolly
(diff)
11:28 PythonOnWindows edited by dconnolly
demoting install details to ticket comment (diff)
10:59 PythonOnWindows edited by ngraham
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09:06 Changeset [1166:c6f50f86eb86] by Nathan Graham <ngraham@…>
default- Removed leftover comments referring to medication test cases. - Removed …
08:28 Changeset [1165:d9d7973df09b] by Dan Connolly <dconnolly@…>
defaultOops; update idx_dimensions_load.sql w.r.t. source_master design (#1009) …
07:45 Ticket #1047 (develop test data for IDX) created by dconnolly
Lack of test data for IDX bit us recently (ticket:1009#comment:12). …
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