HERON Cheyenne Bottoms maps laboratory tests to LOINC
LOINC codes are universal identifiers used to facilitate the sharing of laboratory data for research, outcomes management, and clinical care. The Cheyenne Bottoms release includes two folders for labs: LOINC and Hospital. While the majority of labs are mapped to LOINC, future work continues. As a result, the HERON LOINC hierarchy is in draft format. Please send any feedback on this change to heron-admin@….
The new hierarchy structure for HERON laboratory tests is based upon discussions at the GPC Hackathon Two and work by Cerner. Many thanks to Cerner and the GPC Dev team for input and scripts.
Questions about HERON? Join the Frontiers Lunch and Learn which meets the 1st and 3rd Tuesdays of each month from 12:00 - 1:30 PM in room 3001D Student Center. Register in advance if possible but drop-ins are welcome.
Any publication that results from a project utilizing HERON should cite grant support (CTSA Award # UL1TR000001).
HERON Cheyenne Bottoms Contents Summary
This month, our tour of rivers and lakes in Kansas honors the Cheyenne Bottoms Refuge.
The HERON repository contains approximately 1.85 billion real observations from the hospital, clinics, and research systems:
Observation | Patients | Source | Go-Live | Snapshot | Issues | |
---|---|---|---|---|---|---|
Alerts | 16M | 405K | ||||
KUH/O2/Epic | Nov 2007 | Mar 2015 | ||||
Allergy | 579K | 261K | ||||
KUH/O2/Epic | Nov 2007 | Mar 2015 | various* | |||
Cancer Cases | 11.7M | 78.3K | ||||
KUH Cancer Registry | 1950s | Mar 2015 | labels* | |||
Cardiology Labs | 24.5M | 351K | ||||
KUH/O2/Epic | Nov 2007 | Mar 2015 | ||||
Demographics | 20.2M | 2.11M | ||||
KUH Billing (O2 via SMS) | 1980s | Mar 2015 | various* | |||
UKP Billing | 2000 | Mar 2015 | ||||
33.3K | 33.3K | Frontiers participant registry | Jun 2009 | Mar 2015 | ||
197.2K | 197.2K | Social Security Death Index | 1962 | Mar 2015 | ||
Diagnoses (IDC9) | 76.1M | 817K | ||||
KUH/O2/Epic | Nov 2007 | Mar 2015 | various* | |||
UKP Billing | 2000 | Mar 2015 | ||||
University HealthSystem Consortium (UHC) | Q4 2008 | Feb 2015 | ||||
History | 37.3M | 454K | ||||
KUH/O2/Epic | Nov 2007 | Mar 2015 | ||||
Lab Results | 161M | 385K | ||||
KUH/O2/Epic | 2003 | Mar 2015 | various* | |||
Medications | 174M | 464K | ||||
KUH/O2/Epic (Organized by VA Class) | Nov 2007 | Mar 2015 | various* | |||
Microbiology | 3.59M | 31.4K | ||||
KUH/O2/Epic | 2003 (?) | Mar 2015 | various* | |||
835K | 129K | Negative | 2003 | Mar 2015 | ||
12.1K | 8.87K | Positive | 2003 | Mar 2015 | ||
Nursing Observations | 899M | ? | ||||
KUH/O2/Epic | Nov 2007 | Mar 2015 | various* | |||
Procedure Orders | 186M | 589K | ||||
KUH/O2/Epic | 2003 (?) | Mar 2015 | various* | |||
Procedures (CPT) | 14.4M | 706K | ||||
UKP Billing | 2000 | Mar 2015 | ||||
REDCap | 1.19M | 48.8K | ||||
REDCap | July 2011 | Mar 2015 | ||||
Reports/Notes | 77.8M | 440K | ||||
KUH/O2/Epic | ? | Mar 2015 | ||||
Specimens | 131K | 9.4K | ||||
KUMC Biospecimen Repository | ? | Mar 2015 | ||||
Visit Details | 88M | 98K | ||||
KUH/O2/Epic | Nov 2007 | Mar 2015 | ||||
Hospital Quality Metrics | 8.13M | 104K | ||||
University HealthSystem Consortium (UHC) | Q4 2008 | Feb 2015 | #2911 | |||
All | 1.85B |
Notice
Some material in the UMLS Metathesaurus is from copyrighted sources of the respective copyright holders. Users of the UMLS Metathesaurus are solely responsible for compliance with any copyright, patent or trademark restrictions and are referred to the copyright, patent or trademark notices appearing in the original sources, all of which are hereby incorporated by reference.
Misuse of the Limited Access Death Master File, NTIS, U.S. Department of Commerce data is subject to penalties under provisions of 15 CFR § 1110.200.
Beta Disclaimer
We are providing this early access to obtain feedback from you, the research community. While we are actively working on validating the data loaded into the system with hospital and clinic technical staff, there may be problems with our translation of data from our source systems (HospitalEpicSource and ClinicIdxSource) into HERON.
Please email us at heron-admin@kumc.edu if you discover information you believe may be erroneous.
We are actively working on enhancing the types of data included. Stay tuned to our roadmap to track progress toward upcoming releases.
Various Issues Still Apply
Keep in mind the issues noted in the original HERON beta notice, including:
- date shifting, part of our DeIdentificationStrategy
- age searching (#158)
Enhancements and Problems/Defects/Issues Addressed in this Release
Due to in-progress trac access policy issues, this section may be blank for a time.
Outstanding Problems/Defects/Issues
Ticket | Summary | Keywords |
---|---|---|
#2301 | constraining birth-date by date doesn't work - HERON uses sysdate for start_date in demographics | public-web wrong-results training |
#2617 | Saved searches not updated in REDCap projects after Arkansas release | public-web redcap-to-heron |