Note: We no longer publish the latest version of our code here. We primarily use a kumc-bmi github organization. The heron ETL repository, in particular, is not public. Peers in the informatics community should see MultiSiteDev for details on requesting access.

source: heron_load/devdoc/index.rst @ 0:42ad7288920a

heron-michigan tip
Last change on this file since 0:42ad7288920a was 0:42ad7288920a, checked in by Matt Hoag <mhoag@…>, 6 years ago

Merge with demo_concepts_3800

File size: 1.5 KB
Line 
1.. heron_load documentation master file, created by
2   sphinx-quickstart on Fri Feb  4 17:01:01 2011.
3   You can adapt this file completely to your liking, but it should at least
4   contain the root `toctree` directive.
5   http://sphinx.pocoo.org/
6
7heron_load: ETL for HERON
8=========================
9
10.. Contents::
11
12.. toctree::
13   :maxdepth: 2
14
15
16We keep a `high level overview of heron_load`__, with diagrams, in the wiki.
17This developer documentation, maintained as part of the code, includes
18full details and instructions.
19
20__ http://informatics.kumc.edu/work/wiki/HeronLoad
21
22
23Dependencies: Oracle, paver
24***************************
25
26We suggest a `python virtual environment`__ with paver and the Oracle
27client libraries::
28
29  > . /usr/local/etl_prod/bin/activate
30  (etl_prod)> cd heron_load/heron_load/
31  (etl_prod)>
32
33__ http://informatics.kumc.edu/work/wiki/PythonVirtualEnvironment
34
35
36ETL Tasks and Tools
37*******************
38
39.. automodule:: pavement
40   :members:
41
42.. automodule:: heron_build
43   :members:
44
45.. automodule:: heron_create
46   :members:
47
48.. automodule:: epic_etl
49   :members:
50
51.. automodule:: idx_etl
52   :members:
53
54.. automodule:: kumc_etl
55   :members:
56
57.. automodule:: i2b2_deid
58   :members:
59
60.. automodule:: i2b2_datasources
61   :members:
62
63.. automodule:: qt_patient_update
64   :members:
65
66.. automodule:: db_util
67   :members:
68
69.. import i2b2_project
70
71.. todo:: migrate test_flowsheet_etl.py to SQL
72
73
74Indices and tables
75==================
76
77Outstanding Issues/Tasks
78************************
79
80.. todolist::
81
82* :ref:`genindex`
83* :ref:`modindex`
84* :ref:`search`
Note: See TracBrowser for help on using the repository browser.