{23} Attachment audit (220 matches)

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for PHI cleanup (#1358), licensing

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Realm Id Component Summary Filename Size Created Description Author Ipnr
ticket #178 data-repository Query for encounter vitals in HERON enc_vitals_etc.sql 25493 10:36:47

achoudhary's script

dconnolly 10.17.8.40
ticket #578 data-repository Best Practice Alerts (BPA)s and Medication Alerts from the Epic EMR in HERON kuh_epic_alerts.sql 1258 17:17:01 rwaitman 10.17.8.15
ticket #916 data-repository build initial concepts for UHC uhc_concepts_load.sql 4360 16:07:43

Rev 1035

ngraham 10.17.8.37
ticket #1048 data-repository Navigate Medications by National Standard hierarchy (RxNorm, NDFRT, VA) 20120628_meeting_goals.sql 6437 10:25:07

Medication mapping to RxCUI (as per meeting on 2012.06.28)

ngraham 10.17.8.37
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy epic_med_mapping.sql 15955 15:16:49

Hacked-up version of epic_med_mapping.sql used to test out NDC normalization.

ngraham 10.17.8.37
ticket #1304 data-repository drag-and-drop entrance criteria, outcome, censor for survival analysis plug-in SeparateConcept.png 94033 16:01:21 srao2 10.17.8.76
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy med_name_extract.py 1149 17:57:34

Pre-process script (just a hack for testing)

ngraham 10.17.8.37
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy meds_with_no_rxcui.xlsx 30473 09:39:44

Excel sheet with med facts that don't have an rxcui.

ngraham 10.17.8.37
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy meds_with_no_rxcui_2.xlsx 39127 11:29:12

Meds with no RxCUI after MedEx? NLP: Fixed for improper NULL handling.

ngraham 10.17.8.37
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy results_extract.py 1966 11:33:01

Post-proc script (hack for testing).

ngraham 10.17.8.37
ticket #1333 data-repository observation_fact_demo_vital view design is impractically slow scratchpad_1333.sql 2293 15:27:24

SQL Scratchpad

ngraham 10.17.8.37
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy Clarity Medication Mapping.pptx 348583 12:39:10

For the meeting today (few last-minute tweaks)

ngraham 10.17.8.37
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy epic_med_mapping.2.sql 33754 16:29:14

scratchpad

dconnolly 10.17.8.29
ticket #1304 data-repository drag-and-drop entrance criteria, outcome, censor for survival analysis plug-in generalized.png 6941 17:54:16 srao2 10.17.8.76
ticket #1304 data-repository drag-and-drop entrance criteria, outcome, censor for survival analysis plug-in survdiff.png 7852 08:54:40 srao2 10.17.8.76
ticket #1304 data-repository drag-and-drop entrance criteria, outcome, censor for survival analysis plug-in StratificationAutoLabel.png 39015 11:42:08 srao2 10.17.8.76
ticket #1304 data-repository drag-and-drop entrance criteria, outcome, censor for survival analysis plug-in KM_ethnicity.png 7990 12:59:25 srao2 10.17.8.76
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy clarity_under_va.png 13514 16:06:43

Clarity medication directly under VA class example.

ngraham 10.17.8.37
ticket #1246 data-repository Approximately 2% of Medication Facts are Not Covered by our VA Med Hierarchy unmapped.png 28567 16:06:55

Unmapped example.

ngraham 10.17.8.37
ticket #1655 data-repository realistic date-of-death exposed details about ages > 90 death.html 120156 11:18:00

Analysis of death date differences (hospital versus SSA, NAACCR and UHC)

ngraham 10.17.8.37
ticket #1655 data-repository realistic date-of-death exposed details about ages > 90 death_all_sources_log.html 67003 13:53:33

Death deltas on log10 scale comparing all sources.

ngraham 10.17.8.37
ticket #1655 data-repository realistic date-of-death exposed details about ages > 90 death_all_sources_log_fixed_uhc.html 61547 17:00:23

Used end date for UHC death fact

ngraham 10.17.8.37
ticket #1835 data-repository HERON uses ICD-O-2 labels for ICD-O-3 morphology/histology cancer tumor registry codes breast-except.html 64782 17:05:43 dconnolly 10.17.8.29
ticket #1891 data-repository handle times, not just dates, in i2b2 timeline in HERON timeline-hires.png 6250 17:13:50 dconnolly 10.22.4.34
ticket #1880 data-repository Simultaneous access to multiple REDCap projects in i2b2 redcap_test_projects.sql 7188 15:33:03

SQL for generating 10 fake projects in test i2b2

badagarla 10.17.8.10
ticket #1833 data-repository Searching for some concepts (e.g. VANCOMYCIN(<5KG/NICU) INJ 5MG/ML) results in error runQueryInstance_fromQueryDefinition_CRC.txt 7868 11:34:40 ngraham 10.17.8.37
ticket #1714 data-repository Diagnosis patient stats do not match patient count Concept Visual Attributes vs Branch or Leaf.xlsx 763879 16:38:17

heron terms where the visual attribute is different than its branch or leaf status.

mhoag 10.17.8.25
ticket #2112 data-repository tumor registry terminology hierarchy simplified for cancer study feasibility TumorRegistrySimplified.JPG 2169905 14:19:43 rwaitman 10.17.8.11
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging heron_etl_tasks.dot 8112 15:27:47 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging heron_etl_tasks.dot.svg 88132 15:27:57 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging heron_etl_tasks.dot.pdf 29065 15:28:15 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging epic_i2b2_transform.dot 4205 15:28:26 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging epic_i2b2_transform.dot.svg 34860 15:28:34 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging epic_i2b2_transform.dot.pdf 19340 15:28:47 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging heron_load.csv 10077 16:33:25 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging etl-deps.csv 23309 17:45:00 dconnolly 10.32.128.186
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging ,etl-deps-build.log 8671 17:46:36 dconnolly 10.32.128.186
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging etl-deps.dot.svg 224623 17:51:23 dconnolly 10.32.128.186
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging ,deps.csv 25803 21:39:43 dconnolly 10.32.129.231
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging ,err 57869 21:40:05 dconnolly 10.32.129.231
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging ,dep.dot 25335 21:40:16 dconnolly 10.32.129.231
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging ,dep.dot.svg 234668 21:40:26 dconnolly 10.32.129.231
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging task-deps.dot 7026 15:12:53 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging task-deps.dot.svg 78226 15:13:01 dconnolly 10.17.8.29
ticket #2132 data-repository Improve efficiency of term_tree creation for enhance_concepts term_tree_fast.sql 3473 17:14:51

Kinda Messy work to fix up the CPT fullname and dimcodes

mhoag 10.17.8.25
ticket #2170 data-repository character encoding for HERON ETL source files sqldev_utf8_cr.png 32263 09:30:12 ngraham 10.17.8.37
ticket #2250 data-repository dragging ChrisMackaySolidTumorProgressed from shared folder to query tool hangs response.xml 12312 16:14:49 dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging task-deps.dot.pdf 35085 15:27:29

task deps with dimensions_load_2224

dconnolly 10.17.8.29
ticket #1 data-repository Evaluate ETL tools and techniques for data flow visualization and structured logging task-deps.csv 9169 15:30:36

task deps with dimensions_load_2224

dconnolly 10.17.8.29
ticket #916 data-repository build initial concepts for UHC patch_proposed_changes.txt 2400 13:24:27

Proposed changes - works except for concept code issue noted earlier

ngraham 10.17.8.37
ticket #2112 data-repository tumor registry terminology hierarchy simplified for cancer study feasibility ,shortcuts.diff 4586 16:39:01

code review noodling

dconnolly 10.17.8.29
ticket #2112 data-repository tumor registry terminology hierarchy simplified for cancer study feasibility create_concept_shortcuts.sql 8777 16:39:38

code review noodling (whole file)

dconnolly 10.17.8.29
ticket #1337 data-repository HeronLoad ad-hoc log format vs. CSV for analysis heron_load-2013-10-summary.txt 25366 10:06:36

summary of Solomon logs

dconnolly 10.17.8.29
ticket #2112 data-repository tumor registry terminology hierarchy simplified for cancer study feasibility Staging Hierarchy.jpg 155531 14:25:17

Staging Hierarchy

mhoag 10.17.8.25
ticket #2006 data-repository Searching for some lab concepts such as INFLUENZA A NW (#2686) incorrectly prompts the user for numeric constraints ComponentIDs.xlsx 14658 16:44:34

ComponentIDs_to_be_eliminated_from_LabOrders

schandaka 10.3.8.12
ticket #2006 data-repository Searching for some lab concepts such as INFLUENZA A NW (#2686) incorrectly prompts the user for numeric constraints Labcounts-numeric-text.xls 547328 11:26:59

Labcounts Numeric Text

schandaka 10.14.6.46
ticket #2595 data-repository Micro positive results without sensitivity micropositive.csv 241163 16:16:19

micro positive analysis

schandaka 10.14.6.46
ticket #2655 data-repository Load 'Outpatient Billing Service Line Areas' to HERON idx_table_test.csv 2933 09:00:13

Test Data

vleonardo 10.14.6.52
ticket #2473 data-repository Query by BMI percentile (among children) pivot_bmi_percentiles.py 1330 11:27:57 ngraham 10.14.6.15
ticket #2473 data-repository Query by BMI percentile (among children) cdc_ex 430 11:28:11 ngraham 10.14.6.15
ticket #2006 data-repository Searching for some lab concepts such as INFLUENZA A NW (#2686) incorrectly prompts the user for numeric constraints componentids_whitelist.csv 373331 15:52:28

Whitelist components

schandaka 10.14.6.46
ticket #333 data-repository same encounter queries don't work between IDX and Epic/O2 idx-visit-match.sql 2651 16:42:52 dconnolly 10.14.6.24
ticket #1965 data-repository align encounters for hospital encouters; e.g. UHC LOS visit details and flow sheet vitals EncounterMappingDiscussion_Russ12022014.JPG 985634 09:52:20

EncounterMappingDiscussion_Russ

schandaka 10.14.6.46
ticket #578 data-repository Best Practice Alerts (BPA)s and Medication Alerts from the Epic EMR in HERON HERON_alerts_scatchpad_russ_Feb62015.sql 2481 17:18:47 ssuman 10.14.6.18
ticket #2822 data-repository Prefix diagnosis hierarchy labels with ICD-9 codes to make it easier to navigate Diagnosis hierarchy prefixed, and sorted by ICD-9 code.docx 194114 11:05:37 ssuman 10.14.6.18
ticket #3083 data-repository HERON does not find all expected ED visits (as recorded in ED_EPISODE_ID) encounter_ontology.png 10072 09:25:30 ngraham 10.14.6.15
ticket #333 data-repository same encounter queries don't work between IDX and Epic/O2 idx_mapping_pat_day.sql 2298 15:07:58 mhoag 10.14.6.11
ticket #2947 data-repository search HERON labs by LOINC terminology including GPC usability design missing_parents.py 1635 11:20:10 ngraham 10.14.6.15
ticket #3505 data-repository Alerts 2.0 - Bring in drug dosage, drug allergy and other alert types. med_alert_6.csv 35106619 14:47:13 ssuman 10.14.6.18
ticket #3505 data-repository Alerts 2.0 - Bring in drug dosage, drug allergy and other alert types. med_alert_2.csv 64117 14:47:28 ssuman 10.14.6.18
ticket #3505 data-repository Alerts 2.0 - Bring in drug dosage, drug allergy and other alert types. ALerts2.docx 202072 13:54:21 ssuman 10.14.6.18
ticket #3505 data-repository Alerts 2.0 - Bring in drug dosage, drug allergy and other alert types. ALerts2.2.docx 202072 09:32:25 ssuman 10.14.6.18
ticket #1457 dev-framework EMacs for Windows - customize for Python init.el 1696 07:48:39

emacs config - default to unix line endings.

ngraham 10.17.8.37

(empty) (27 matches)

Realm Id Component Summary Filename Size Created Description Author Ipnr
wiki DataUserAgreementStory KUMC_HERON_ElectronicDUAPIv3.doc 69120 14:28:10

Data Use Agreement KUMC PI

rwaitman 10.17.8.15
wiki DataUserAgreementStory KUMC HERON Policyv3.DOC 35840 14:28:26

HERON Business policy

rwaitman 10.17.8.15
wiki Using I2B2 Screenshot.png 40122 14:32:12

slide 9 "Project data can be added back to the ESD" from "How to i2b2"

dconnolly 10.17.8.40
wiki DataUserAgreementStory whiteboard.JPG 213991 10:23:40

photo from whiteboard chat

dconnolly 10.17.8.40
wiki HERON heron-arch.jpg 52299 09:56:57

HERON arch from Russ's msg of 07/12/2010 09:48:12 AM

dconnolly 10.17.8.40
wiki eCRF creation process eCRFFlowchartCurrent.png 126074 10:10:36

eCRF Process Flowchart

rwalz 10.17.8.57
wiki Using I2B2 Doc_for_i2b2_1.4_Install.doc 4318208 14:18:00

i2b2 install notes with some local tweaks

dconnolly 10.17.8.40
wiki Using I2B2 Creating_a_Project_in_i2b2.doc 33280 14:23:53

on creating a project in i2b2

dconnolly 10.17.8.40
wiki Using I2B2 Design_document_i2b2.doc 522240 14:29:19

architecture for i2b2 deployment

dconnolly 10.17.8.40
wiki KHPA_HIE RussWaitmanKHPA_HIEJuly282010.docx 1351858 10:20:23

KHPA Medicaid HIE State plan Analysis

rwaitman 10.17.8.15
wiki KHPA_HIE Mcd Section of Statewide HIE Strategic Plan -DRAFT 7-19-10.docx 61281 10:21:02

Draft Medicaid Section of State HIE Plan July 28, 2010

rwaitman 10.17.8.15
wiki DeIdentificationStrategy VandyBioVUSDRoden.pdf 508799 08:38:57

Vanderbilt BioVU Roden description

rwaitman 10.17.8.15
wiki DeIdentificationStrategy VandySDBasford2010-04-16.pptx 842022 08:49:01 rwaitman 10.17.8.15
wiki HospitalEpicSource epiccolumncrawler.py 1645 13:42:12

Russ' simple script to look for columns in all epic tables.

rwaitman 10.17.8.15
wiki ClinicIdxSource Incorporating IDX data into HERON October252010Minutes.docx 18658 16:55:07

Incorporating IDX data into HERON

rwaitman 10.17.8.15
wiki HERON HERON_Repository_HSC_IRB_Protocolv1_1.docx 325642 15:12:29

HERON IRB protocol

rwaitman 10.17.8.15
wiki HERON L0017227FinalElectronicHeronCopyFromLisaH09092010.docx 64000 15:12:49

Final legal agreement for HERON with System Access Agreement

rwaitman 10.17.8.15
wiki KUBMIPresentations BiomedicalInformaticsCTSATalkSep212010v2.pptx 3692621 13:58:36

CTSA description Biostatistics Seminar September 21, 2010

rwaitman 10.17.8.15
wiki KUBMIPresentations KINBREWaitmanMay2010.pptx 356095 14:00:35

KINBRE Talk May 11, 2010

rwaitman 10.17.8.15
wiki KUBMIPresentations NewInformaticsCapabilitesTalkDec82010.2.pptx 3855405 09:29:22

OSARM talk December 8, 2010

rwaitman 10.17.8.15
blog Blog: Informatics at KU Med Center not-better.png 28065 16:41:47

NOT: information resource > person

dconnolly 10.17.8.40
wiki KUBMIPresentations BiomedicalInformaticsClinical_ResearchTalkSep302010.pptx 4527548 08:42:03

Master of Clinical Research Talk Sept 30, 2010

dconnolly 10.17.8.40
wiki KUBMIPresentations DevelopInformaticsCapabilitiesWichitaSOMTalkDec152010.pptx 4522327 10:57:12

Talk at the Health Informatics Forum sponsored by the Associate Dean for Research

rwaitman 10.17.8.15
wiki KUBMIPresentations Health Informatics Forum.PDF 47647 10:57:44

Wichita Health Informatics Forum Dec 15, 2010 speakers

rwaitman 10.17.8.15
wiki REDCap redcaplogo.jpg 13679 10:57:03

REDCap

kford 10.17.8.60
wiki REDCap KUMC_REDCap Brochure_White.pdf 340332 11:04:32

KUMC REDCap Brochure

kford 10.17.8.60
blog Blog: Updated KUMC clinical chairs on HERON's status Division of Medical InformaticsClinicalChairsFeb242011.pptx 2782034 08:12:53 rwaitman 10.17.8.15
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