Opened 7 years ago

Closed 7 years ago

Last modified 7 years ago

#2589 closed enhancement (fixed)

new 'Antimicrobial...' REDCap project

Reported by: tmcmahon Owned by: badagarla
Priority: major Milestone: heron-arkansas-update
Component: data-repository Keywords: public-web
Cc: ngraham, mhoag, ssuman Blocked By:
Blocking: #2572, #2581 Sensitive: no

Description

Project title: Antimicrobial tolerance and clinical outcomes in Staphylococcus aureus bacteremia

pid=2621

Only pulling in MRNs to narrow searches to a set of patients

Contact: Nick Britt

Change History (14)

comment:1 Changed 7 years ago by tmcmahon

comment:2 Changed 7 years ago by dconnolly

Cc: ssuman added
Type: taskenhancement

Bhargav,

Have you showed Suman how this works? Maybe for another month. Meanwhile...

We're still using the instructions in GroupOnly/BulkTransfer#REDCapData, i.e. source:heron_staging/redcap/README , right? Not much progress on automation (#2387, #2408)?

Tamara, how would you refer to this new REDCap project in a blog item? Or would you at all? I'm trying to distinguish this "new REDCap project" from others.

And this seems like an enhancement, i.e. another feature that we should verify for each release. I wonder what's a cost-effective way to add automated tests for these REDCap projects.

comment:3 Changed 7 years ago by dconnolly

Blocking: 2581 removed

comment:4 in reply to:  2 Changed 7 years ago by badagarla

Replying to dconnolly:

  • I am going to work with Suman on this.

comment:5 Changed 7 years ago by dconnolly

Type: enhancementtask

comment:6 Changed 7 years ago by badagarla

Status: newaccepted

comment:7 Changed 7 years ago by badagarla

Resolution: fixed
Status: acceptedclosed

comment:8 Changed 7 years ago by tmcmahon

Blocking: 2581 added
Resolution: fixed
Status: closedreopened

Testing query returns 0 patients. Cannot release Arkansas yet.

comment:9 Changed 7 years ago by dconnolly

I gather from chatting with Bhargav that an assumption about presence of "form complete" fields isn't met by the data from this project; perhaps due to a recent REDCap upgrade.

This suggests bumping up the priority of #2387, #2408.

comment:10 Changed 7 years ago by badagarla

Resolution: fixed
Status: reopenedclosed

We manufactured a form complete field for all the patients in this project on id_b2
(With Nathan)

insert into
redcap.redcap_data
(
select 
record_id,
project_id,
event_id, 
record,
'my_first_instrument_complete' as field_name,
'2' as value
from redcap.redcap_data
where project_id=2621
and field_name='record_id'
);

And then ran the redcap.redcap_facts creation SQL from redcap_i2b2_transform.sql to verify that we can now see the facts from this project. Now onto loading REDCap facts

comment:11 Changed 7 years ago by dconnolly

Type: taskenhancement

comment:12 Changed 7 years ago by ngraham

comment:13 Changed 7 years ago by mhoag

Keywords: public-web added

comment:14 Changed 7 years ago by ngraham

Sensitive: unset
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