nearby: DevTools

While we are Using I2B2 for the bulk of the functionality of HERON, heron-admin provides a regulatory enforcement web layer for HERON#governance. HERONTrainingMaterials? provides end-user documentation. (Well, it used to; see #1268)

in progress; see ticket:600#comment:11 for context

Automated tests to match HERONTrainingMaterials? sure would be nice.


Developer documentation, including doctests, is generated from the code:

Access Policy and Authority Flow

Anyone who can login (via CAS) can review usage stats or sign a system access agreement (which is recorded in REDCap).

Investigators, i.e. faculty and executives, can submit investigator requests (sponsorship, data use) to the DROC.

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Investigators and sponsored users, provided their human subjects training is current and they have signed the system access agreement, can follow the "start i2b2 query tool" link; if they have an acknowledgement on file, they can use i2b2; otherwise, they can acknowledge the disclaimer.

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Module Dependencies

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Development process

genshi template language @@...

see source:raven-j/heron_wsgi/Makefile and source:raven-j/README.rst

Clone Repository

UsingVersionControl: Clone the raven-j (a.k.a Heron Admin) repository from using your preferred method (e.g. TortoiseHg?, Hg command-line, etc.).

2. Setup Virtualenv

dependencies... mysql, cx_Oracle, etc. ... PythonVirtualEnvironment, PythonOnWindows?

2.1. Create an associated Python virtualenv (optimally separated from the code).

$ virtualenv <venv-path>

2.2. Activate your virtualenv.

$ source <venv-path>/bin/activate

2.3. Use PIP to install necessary Python

$ cd <raven-j-path>
$ pip install -r requirements.txt

... and (introduced in #653 ldap_cert_653; TODO: merge requirements files) ...

$ cd <raven-j-path>/traincheck/
$ pip install -r requirements.txt

see also PythonVirtualEnvironment, PythonOnWindows?, WritingQualityCode#pypy)

Unit test can be run with:

$ python -m doctest <file>

CLI Integration Testing

see GroupOnly/HeronAdmin


oops... heron-admin is now ambiguous: support email address and software package.

Last modified 3 years ago Last modified on 05/15/15 10:02:54