Changes between Initial Version and Version 19 of I2B2Community


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Timestamp:
07/25/14 17:03:39 (3 years ago)
Author:
dconnolly
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  • I2B2Community

    v1 v19  
     1[[PageOutline]]
     2... up to [[Using I2B2]]
     3
     4== i2b2 Academic User Group ==
     5  The [https://www.i2b2.org/work/aug.html i2b2 Academic Users' Group]         has been set up to serve as a forum for those academic health centers interested in implementing the i2b2 software suite and is designed to support awareness of related activity amongst participating institutions, stimulate collaborations on developing and/or modifying elements of the i2b2 suite to better suit local or broader needs, and to provide guidance to the i2b2 team on issues ranging from software licensing to management of version control to collaborations with industrial partners.
     6
     7Several of us participate.
     8
     9 * [http://community.i2b2.org/wiki/display/community/AUG+E-mail+Repository AUG E-mail Repository] is an archive of the mailing list (manually maintained ?!)
     10
     11=== 4th Annual i2b2 AUG and SHRINE Conference and NLP Workshop === #aug2014
     12
     13   - [https://www.i2b2.org/work/aug.html AUG activities] has agenda
     14July 9-11, 2014
     15Joseph P. Martin Conference Center
     16Boston, MA 02115
     17
     18see also:
     19   - GPC:wiki:ModelMashUp#i2b2meetingJuly10-11inBoston
     20   - July 8-11 GroupOnly/DanStatus#Travel
     21
     22
     23=== 2013 AUG Conference ===
     24
     25 * [https://www.i2b2.org/work/aug.html AUG] and SHRINE Conference
     26   \\ June 18-20, 2013
     27   \\ Joseph P. Martin Conference Center
     28   \\ 77 Avenue Louis Pasteur
     29   \\ Boston, MA 02115
     30   - [https://cbmi.med.harvard.edu/shrine2013/index.html SHRINE event] with videos and such
     31 * Dan's presentation re HeronStatsPlugins
     32   * [https://www.dropbox.com/s/vlg67gbxkd51uj4/extending-i2b2-with-R.pdf Extending an I2B2based Clinical Data Repository with the R Statistical Platform] slides in PDF on dropbox; [http://www.slideshare.net/slideshow/embed_code/23622265 on slideshare]
     33     * [https://docs.google.com/document/d/1viZxv0KAkOPIQ_XdrcxK2MjprUqgNNz_QZjoZ_ztaEA/edit#heading=h.x6gy7fu7z4bb abstract]
     34
     35There was quite a bit of interest in our timeline hover enhancements (e.g. #1997). Here's hoping we manage to share the code soon.
     36
     37Dan made notes to follow up on the following:
     38
     39[[TicketQuery(id=1|513|2117|2118|2119|338)]]
     40
     41 * #1 - several mentioned using talend.
     42   - I like the idea of a big picture diagram of the ETL process. I went over my notes and found good reasons why I decided against talend (and other diagram-to-code tools), but I've made some progress on a code-to-diagram approach.
     43 * #338 - the Cincinnati guys recommended `alter table T nologging`
     44 * #513 - I talked with the Cincinnati developers about query performance, which led to discussion of ETL performance. They pretty much laughed at the whole idea of getting reasonable performance using database links.
     45 * #2117 - The Cincinnatti guys suggested DML Error logging to avoid crashing the whole ETL over one goofy lab value
     46 * #2118 - postgresql support, jboss 1.7, Oracle 11g
     47 * #2119 - the installer from the German guys is not just Ubuntu any more
     48
     49=== 2011 AUG Conference ===
     50
     51''Here's hoping I (Dan) find time to edit this into a blog item...''
     52
     53 * [https://cbmi.med.harvard.edu/shrine2011/videos SHRINE conference videos]
     54   * Shawn's [https://cbmi.med.harvard.edu/shrine2011/videos/levels-data-de-identification-i2b2 Levels of Data De-identification in i2b2] talk was ''excellent''.
     55
     56presentation materials are on the [https://www.i2b2.org/work/aug.html AUG page]:
     57
     58>  ==== June 28-29, First Annual i2b2 AUG Conference, Boston, MA ====
     59>  * Overview of i2b2 Roadmap (Kohane)
     60>  * Software Plans 2011-2014 (Murphy, Phillips, Mendis)
     61>    * "Data mart request form" slide 13
     62>    * "Modifiers in UI" slide 26
     63>    * "Constrain observations into the same encounter" slide 32
     64>    * 1.6 has Ontology editor (Java client only)
     65>      * ''I'm skeptical about whether it's better than a spreadsheet.''
     66>    * IM cell for identified access
     67>    * Smart apps
     68>    * Collaboration: Jira, wiki, svn
     69>      * ''Is the public svn repository where the i2b2 devs do their daily work? Do they use Jira?''
     70>    * new features: Cancel Query. '''Print''' ''careful!'' (add/move note to #165)
     71>    * online help (which ticket?)
     72>    * stats
     73>  * Proof of Principle Use Case: Rheumatoid Arthritis Pheno to Geno (Plenge)
     74>  * Ontologies (Murphy and team)
     75>    * ''I'd like to get involved in this work at some point. See RealistOntology and SemanticWeb''
     76>  * SMART (Substitutable Medical Applications, reusable technologies)
     77
     78(for reference: dckc tweets [http://twitter.com/dckc/status/85387267471966209 27 Jun] thru [http://twitter.com/dckc/status/86455114486915072 30 Jun]
     79)
     80
     81[http://www.theconfcenter.hms.harvard.edu/ conference center] was very, very nice. Thanks to the sponsors!
     82
     83=== 2010 AUG Meeting ===
     84Dan went the October 2010 meeting; [http://informatics.kumc.edu/2010-i2b2-aug-trip/i2b2-aug.html 2010 i2b2 AUG trip notes] are perhaps cryptic, but available. The notes include [http://informatics.kumc.edu/2010-i2b2-aug-trip/photos.html photos] of i2b2 developers etc.
     85
     86=== Upstream collaboration ===
     87
     88We use the `i2b2-upstream` keyword for issues that we have (or: we should have) reported upstream:
     89
     90[[TicketQuery(keywords~=i2b2-upstream)]]
     91
     92Dan has contributed some code and logged it against JIRA tickets. ''todo: add pointers here''